Output from docker build

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  • Complete output from docker-compose up command
		Creating network "webwork2_default" with the default driver
		Creating volume "webwork2_oplVolume" with default driver
		Creating volume "webwork2_mysql" with default driver
		Creating webwork2_db_1 ... done
		Creating webwork2_r_1  ... done
		Creating webwork2_app_1 ... done
		Attaching to webwork2_r_1, webwork2_db_1, webwork2_app_1
		r_1    |
		r_1    | R version 3.3.3 (2017-03-06) -- "Another Canoe"
		r_1    | Copyright (C) 2017 The R Foundation for Statistical Computing
		r_1    | Platform: x86_64-pc-linux-gnu (64-bit)
		r_1    |
		r_1    | R is free software and comes with ABSOLUTELY NO WARRANTY.
		r_1    | You are welcome to redistribute it under certain conditions.
		r_1    | Type 'license()' or 'licence()' for distribution details.
		r_1    |
		r_1    | R is a collaborative project with many contributors.
		r_1    | Type 'contributors()' for more information and
		r_1    | 'citation()' on how to cite R or R packages in publications.
		r_1    |
		db_1   | Initializing database
		r_1    | Type 'demo()' for some demos, 'help()' for on-line help, or
		r_1    | 'help.start()' for an HTML browser interface to help.
		r_1    | Type 'q()' to quit R.
		r_1    |
		r_1    | > Rserve::run.Rserve(remote=TRUE, auth=FALSE, daemon=FALSE)
		r_1    | -- running Rserve in this R session (pid=1), 1 server(s) --
		r_1    | (This session will block until Rserve is shut down)
		app_1  | Setting libpaper1 papersize to letter
		app_1  | Cloning the OPL - This takes time - please be patient.
		app_1  | Cloning into 'webwork-open-problem-library'...
		db_1   |
		db_1   |
		db_1   | PLEASE REMEMBER TO SET A PASSWORD FOR THE MariaDB root USER !
		db_1   | To do so, start the server, then issue the following commands:
		db_1   |
		db_1   | '/usr/bin/mysqladmin' -u root password 'new-password'
		db_1   | '/usr/bin/mysqladmin' -u root -h  password 'new-password'
		db_1   |
		db_1   | Alternatively you can run:
		db_1   | '/usr/bin/mysql_secure_installation'
		db_1   |
		db_1   | which will also give you the option of removing the test
		db_1   | databases and anonymous user created by default.  This is
		db_1   | strongly recommended for production servers.
		db_1   |
		db_1   | See the MariaDB Knowledgebase at http://mariadb.com/kb or the
		db_1   | MySQL manual for more instructions.
		db_1   |
		db_1   | Please report any problems at http://mariadb.org/jira
		db_1   |
		db_1   | The latest information about MariaDB is available at http://mariadb.org/.
		db_1   | You can find additional information about the MySQL part at:
		db_1   | http://dev.mysql.com
		db_1   | Consider joining MariaDB's strong and vibrant community:
		db_1   | https://mariadb.org/get-involved/
		db_1   |
		db_1   | Database initialized
		app_1  | POST git-upload-pack (177 bytes)
		db_1   | MySQL init process in progress...
		db_1   | 2019-10-06 18:44:41 0 [Note] mysqld (mysqld 10.4.8-MariaDB-1:10.4.8+maria~bionic) starting as process 107 ...
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Using Linux native AIO
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Uses event mutexes
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Number of pools: 1
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Using SSE2 crc32 instructions
		db_1   | 2019-10-06 18:44:41 0 [Note] mysqld: O_TMPFILE is not supported on /tmp (disabling future attempts)
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Initializing buffer pool, total size = 256M, instances = 1, chunk size = 128M
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Completed initialization of buffer pool
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: 128 out of 128 rollback segments are active.
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Creating shared tablespace for temporary tables
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Waiting for purge to start
		app_1  | remote: Enumerating objects: 56, done.
		remote: Counting objects: 100% (56/56), done.
		remote: Compressing objects: 100% (51/51), done.
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: 10.4.8 started; log sequence number 139827; transaction id 21
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
		db_1   | 2019-10-06 18:44:41 0 [Note] Plugin 'FEEDBACK' is disabled.
		db_1   | 2019-10-06 18:44:41 0 [Warning] 'user' entry 'root@28c7133c48c2' ignored in --skip-name-resolve mode.
		db_1   | 2019-10-06 18:44:41 0 [Warning] 'user' entry '@28c7133c48c2' ignored in --skip-name-resolve mode.
		db_1   | 2019-10-06 18:44:41 0 [Warning] 'proxies_priv' entry '@% root@28c7133c48c2' ignored in --skip-name-resolve mode.
		db_1   | 2019-10-06 18:44:41 0 [Note] InnoDB: Buffer pool(s) load completed at 191006 18:44:41
		db_1   | 2019-10-06 18:44:41 0 [Note] Reading of all Master_info entries succeeded
		db_1   | 2019-10-06 18:44:41 0 [Note] Added new Master_info '' to hash table
		db_1   | 2019-10-06 18:44:41 0 [Note] mysqld: ready for connections.
		db_1   | Version: '10.4.8-MariaDB-1:10.4.8+maria~bionic'  socket: '/var/run/mysqld/mysqld.sock'  port: 0  mariadb.org binary distribution
		db_1   | Warning: Unable to load '/usr/share/zoneinfo/leap-seconds.list' as time zone. Skipping it.
		db_1   | 2019-10-06 18:45:12 10 [Warning] 'proxies_priv' entry '@% root@28c7133c48c2' ignored in --skip-name-resolve mode.
		db_1   |
		db_1   | 2019-10-06 18:45:12 0 [Note] mysqld (initiated by: unknown): Normal shutdown
		db_1   | 2019-10-06 18:45:12 0 [Note] Event Scheduler: Purging the queue. 0 events
		db_1   | 2019-10-06 18:45:12 0 [Note] InnoDB: FTS optimize thread exiting.
		db_1   | 2019-10-06 18:45:13 0 [Note] InnoDB: Starting shutdown...
		db_1   | 2019-10-06 18:45:13 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
		db_1   | 2019-10-06 18:45:13 0 [Note] InnoDB: Buffer pool(s) dump completed at 191006 18:45:13
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Shutdown completed; log sequence number 20283309; transaction id 14632
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
		db_1   | 2019-10-06 18:45:14 0 [Note] mysqld: Shutdown complete
		db_1   |
		db_1   |
		db_1   | MySQL init process done. Ready for start up.
		db_1   |
		db_1   | 2019-10-06 18:45:14 0 [Note] mysqld (mysqld 10.4.8-MariaDB-1:10.4.8+maria~bionic) starting as process 1 ...
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Using Linux native AIO
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Uses event mutexes
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Number of pools: 1
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Using SSE2 crc32 instructions
		db_1   | 2019-10-06 18:45:14 0 [Note] mysqld: O_TMPFILE is not supported on /tmp (disabling future attempts)
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Initializing buffer pool, total size = 256M, instances = 1, chunk size = 128M
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Completed initialization of buffer pool
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: 128 out of 128 rollback segments are active.
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Creating shared tablespace for temporary tables
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
		db_1   | 2019-10-06 18:45:14 0 [Note] InnoDB: Waiting for purge to start
		db_1   | 2019-10-06 18:45:15 0 [Note] InnoDB: 10.4.8 started; log sequence number 20283309; transaction id 14632
		db_1   | 2019-10-06 18:45:15 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
		db_1   | 2019-10-06 18:45:15 0 [Note] Plugin 'FEEDBACK' is disabled.
		db_1   | 2019-10-06 18:45:15 0 [Note] Server socket created on IP: '::'.
		db_1   | 2019-10-06 18:45:15 0 [Warning] 'proxies_priv' entry '@% root@28c7133c48c2' ignored in --skip-name-resolve mode.
		db_1   | 2019-10-06 18:45:15 0 [Note] InnoDB: Buffer pool(s) load completed at 191006 18:45:15
		db_1   | 2019-10-06 18:45:15 0 [Note] Reading of all Master_info entries succeeded
		db_1   | 2019-10-06 18:45:15 0 [Note] Added new Master_info '' to hash table
		db_1   | 2019-10-06 18:45:15 0 [Note] mysqld: ready for connections.
		db_1   | Version: '10.4.8-MariaDB-1:10.4.8+maria~bionic'  socket: '/var/run/mysqld/mysqld.sock'  port: 3306  mariadb.org binary distribution
		remote: Total 383391 (delta 22), reused 14 (delta 4), pack-reused 383335
		Receiving objects: 100% (383391/383391), 512.57 MiB | 7.27 MiB/s, done./s
		Resolving deltas: 100% (295904/295904), done.
		Checking out files: 100% (67466/67466), done.6)
		app_1  | Creating a new /opt/webwork/webwork2/conf/site.conf
		app_1  | Creating a new /opt/webwork/webwork2/conf/localOverrides.conf
		app_1  | Waiting for database to become available...
		db_1   | 2019-10-06 18:46:08 8 [Warning] Aborted connection 8 to db: 'unconnected' user: 'unauthenticated' host: '172.23.0.4' (This connection closed normally without authentication)
		app_1  | Can't create html_temp directory '/opt/webwork/webwork2/htdocs/tmp/admin', since the parent directory is not writeable. You will have to create this directory manually.
		app_1  | addcourse:  WeBWorK root directory set to /opt/webwork/webwork2
		app_1  | addcourse:  WeBWorK server is starting
		app_1  | addcourse:  WeBWorK root directory set to /opt/webwork/webwork2 in webwork2/conf/webwork.apache2-config
		app_1  | addcourse:  The following locations and urls are set in webwork2/conf/site.conf
		app_1  | addcourse:  PG root directory set to /opt/webwork/pg
		app_1  | addcourse:  WeBWorK server userID is www-data
		app_1  | addcourse:  WeBWorK server groupID is www-data
		app_1  | addcourse:  The webwork url on this site is http://localhost/webwork2
		app_1  | Admin course is created.
		app_1  | create modelCourse subdirectory
		app_1  | Creating htdocs/tmp directory
		app_1  | htdocs/tmp directory created
		app_1  | defaultClasslist.lst is being created
		app_1  | We will run OPL-update as the tagging-taxonomy.json file is missing in webwork2/htdocs/DATA/.
		app_1  | Check if you should be mounting webwork2/htdocs/DATA/ from outside the Docker image!
		app_1  | Download a JSON containing information on the latest release
		app_1  | curl -s https://api.github.com/repos/heiderich/webwork-open-problem-library/releases/latest > latest_release.json
		app_1  | curl -L `jq -r '[.assets | .[] | select(.name == "webwork-open-problem-library-METADATA.tar.gz" ) | .browser_download_url][0]' latest_release.json` -o webwork-open-problem-library-METADATA.tar.gz
		app_1  |   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
		app_1  |                                  Dload  Upload   Total   Spent    Left  Speed
		100   634    0   634    0     0   2193      0 --:--:-- --:--:-- --:--:--  2193
		100 1023k  100 1023k    0     0  1199k      0 --:--:-- --:--:-- --:--:-- 1199k
		app_1  | tar xfz webwork-open-problem-library-METADATA.tar.gz
		app_1  | jq -r '.tag_name' latest_release.json > latest_release.tag
		app_1  | fatal: No such remote: heiderich
		app_1  | From https://github.com/heiderich/webwork-open-problem-library
		app_1  |  * [new branch]            master                -> heiderich/master
		app_1  |  * [new tag]               2019-08-19-0787211298 -> 2019-08-19-0787211298
		app_1  |  * [new tag]               2019-09-19-206e5c400f -> 2019-09-19-206e5c400f
		app_1  |  * [new tag]               2019-09-25-3377b28ab0 -> 2019-09-25-3377b28ab0
		app_1  |  * [new tag]               aaa                   -> aaa
		app_1  |  * [new tag]               test                  -> test
		app_1  |  * [new tag]               zzz                   -> zzz
		app_1  | Checking out tag 2019-09-25-3377b28ab0
		app_1  | Note: checking out '2019-09-25-3377b28ab0'.
		app_1  |
		app_1  | You are in 'detached HEAD' state. You can look around, make experimental
		app_1  | changes and commit them, and you can discard any commits you make in this
		app_1  | state without impacting any branches by performing another checkout.
		app_1  |
		app_1  | If you want to create a new branch to retain commits you create, you may
		app_1  | do so (now or later) by using -b with the checkout command again. Example:
		app_1  |
		app_1  |   git checkout -b <new-branch-name>
		app_1  |
		app_1  | HEAD is now at 3377b28ab0 Merge pull request #602 from jirilebl/fixes2
		app_1  | Restoring OPL tables from the TABLE-DUMP/OPL-tables.sql file
		app_1  | Waiting for database to become available...
		db_1   | 2019-10-06 18:46:13 10 [Warning] Aborted connection 10 to db: 'unconnected' user: 'unauthenticated' host: '172.23.0.4' (This connection closed normally without authentication)
		app_1  | OPL path seems to be /opt/webwork/libraries/webwork-open-problem-library/
		app_1  | Importing statistics for 2 courses.
		app_1  |    1   2
		app_1  |
		app_1  | You may want to run load-OPL-global-statistics.pl to update the global statistics data.
		app_1  | If this is being run by OPL-update, that will be done automatically.
		app_1  | Restoring JSON files from JSON-SAVED directory
		app_1  | Fixing ownership and permissions (just in case it is needed)
		app_1  | end fixing ownership and permissions
		app_1  | webwork.apache2-config:  WeBWorK server is starting
		app_1  | webwork.apache2-config:  WeBWorK root directory set to /opt/webwork/webwork2 in webwork2/conf/webwork.apache2-config
		app_1  | webwork.apache2-config:  The following locations and urls are set in webwork2/conf/site.conf
		app_1  | webwork.apache2-config:  PG root directory set to /opt/webwork/pg
		app_1  | webwork.apache2-config:  WeBWorK server userID is www-data
		app_1  | webwork.apache2-config:  WeBWorK server groupID is www-data
		app_1  | webwork.apache2-config:  The webwork url on this site is http://localhost/webwork2
		app_1  | webwork.apache2-config:  The webwork smtp server address is localhost
		app_1  | webwork.apache2-config:     The webwork smtp server port is
		app_1  | webwork.apache2-config:     The webwork smtp server protocol is 'not ssl'
		app_1  | Check in with MAA site
		app_1  | End connectivity check
		app_1  | WebworkSOAP::WSDL: webwork_directory set to /opt/webwork/webwork2 via $WeBWorK::Constants::WEBWORK_DIRECTORY set in webwork.apache2-config
		app_1  | WebworkSOAP::WSDL: rpc_url set to http://localhost/webwork2_rpc
		app_1  | WebworkWebservice: webwork_directory set to /opt/webwork/webwork2 via $WeBWorK::Constants::WEBWORK_DIRECTORY set in webwork.apache2-config
		app_1  | webwork.apache2-config:  WeBWorK server is starting
		app_1  | webwork.apache2-config:  WeBWorK root directory set to /opt/webwork/webwork2 in webwork2/conf/webwork.apache2-config
		app_1  | webwork.apache2-config:  The following locations and urls are set in webwork2/conf/site.conf
		app_1  | webwork.apache2-config:  PG root directory set to /opt/webwork/pg
		app_1  | webwork.apache2-config:  WeBWorK server userID is www-data
		app_1  | webwork.apache2-config:  WeBWorK server groupID is www-data
		app_1  | webwork.apache2-config:  The webwork url on this site is http://localhost/webwork2
		app_1  | webwork.apache2-config:  The webwork smtp server address is localhost
		app_1  | webwork.apache2-config:     The webwork smtp server port is
		app_1  | webwork.apache2-config:     The webwork smtp server protocol is 'not ssl'
		app_1  | Check in with MAA site
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