Regression.pm - weighted linear regression package (line+plane fitting)
Regression.pm is a multivariate linear regression package. That is, it estimates the c coefficients for a line-fit of the type
y= b(0)*x(0) + b(1)*x1 + b(2)*x2 + ... + b(k)*xk
given a data set of N observations, each with k independent x variables and one y variable. Naturally, N must be greater than k---and preferably considerably greater. Any reasonable undergraduate statistics book will explain what a regression is. Most of the time, the user will provide a constant ('1') as x(0) for each observation in order to allow the regression package to fit an intercept.
If the sample data for (x1, x2, y) includes ($x1[$i], $x2[$i], $y[$i]) for 0<=$i<=5, type
$reg = Regression->new( 3, "y", [ "const", "x1", "x2" ] );
for($i=0; $i<6; $i++){ $reg->include( $y[$i], [ 1.0, $x1[$i], $x2[$i] ] ); }
@coeff= $reg->theta();
$b0 = $coeff[0][0]; $b1 = $coeff[0][1]; $b2 = $coeff[0][2];
W. M. Gentleman, University of Waterloo, "Basic Description
For Large, Sparse Or Weighted Linear Least Squares Problems
(Algorithm AS 75)," Applied Statistics (1974) Vol 23; No. 3
R=Rbar is an upperright triangular matrix, kept in normalized form with implicit 1's on the diagonal. D is a diagonal scaling matrix. These correspond to "standard Regression usage" as
X' X = R' D R
A backsubsitution routine (in thetacov) allows to invert the R matrix (the inverse is upper-right triangular, too!). Call this matrix H, that is H=R^(-1).
(X' X)^(-1) = [(R' D^(1/2)') (D^(1/2) R)]^(-1)
= [ R^-1 D^(-1/2) ] [ R^-1 D^(-1/2) ]'
This algorithm is the statistical "standard." Insertion of a new observation can be done one obs at any time (WITH A WEIGHT!), and still only takes a low quadratic time. The storage space requirement is of quadratic order (in the indep variables). A practically infinite number of observations can easily be processed!
Naturally, Gentleman invented this algorithm. Adaptation by ivo welch. Alan Miller (alan@dmsmelb.mel.dms.CSIRO.AU) pointed out nicer ways to compute the R^2.
receives the number of variables on each observations (i.e., an integer) and returns the blessed data structure. Also takes an optional name for this regression to remember, as well as a reference to a k*1 array of names for the X coefficients.
is used for debugging.
prints the estimated coefficients, and R^2 and N.
receives one new observation. Call is
$blessedregr->include( $yvariable, [ $x1, $x2, $x3 ... $xk ], 1.0 );
where 1.0 is an (optional) weight. Note that inclusion with a weight of -1 can be used to delete an observation.
The function returns the number of observations so far included.
estimates and returns the vector of coefficients.
These functions provide common auxiliary information. rsq, adjrsq, sigmasq, sst, and ybar have not been checked but are likely correct. The results are stored for later usage, although this is somewhat unnecessary because the computation is so simple anyway.
The sample code included with this package demonstrates regression usage. To execute it, just set the constant DEBUGGING at the script head to 1, and do
perl Regression.pm
The printout should be
****************************************************************
Regression 'sample regression'
****************************************************************
Theta[0='const']= 0.2950
Theta[1='someX']= 0.6723
Theta[2='someY']= 1.0688
R^2= 0.808, N= 4
****************************************************************
This package lacks routines to compute the standard errors of the coefficients. This requires access to a matrix inversion package, and I do not have one at my disposal. If you want to add one, please let me know.
perl is unaware of IEEE number representations. This makes it a pain to test whether an observation contains any missing variables (coded as 'NaN' in Regression.pm).
I am a novice perl programmer, so this is probably ugly code. However, it does seem to work, and I could not find anything equivalent on cpan.
Installation consists of moving the file 'Regression.pm' into a subdirectory Statistics of your modules path (e.g., /usr/lib/perl5/site_perl/5.6.0/).
The documentation was produced from the module:
pod2html -noindex -title "perl weighted least squares regression package" Regression.pm > Regression.html
The documentation was slightly modified by Maria Voloshina, University of Rochester.
This module is released for free public use under a GPL license.
(C) Ivo Welch, 2001.