Output from docker build
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- Complete output from docker-compose up command
Creating network "webwork2_default" with the default driver Creating volume "webwork2_oplVolume" with default driver Creating volume "webwork2_mysql" with default driver Creating webwork2_db_1 ... done Creating webwork2_r_1 ... done Creating webwork2_app_1 ... done Attaching to webwork2_r_1, webwork2_db_1, webwork2_app_1 r_1 | r_1 | R version 3.3.3 (2017-03-06) -- "Another Canoe" r_1 | Copyright (C) 2017 The R Foundation for Statistical Computing r_1 | Platform: x86_64-pc-linux-gnu (64-bit) r_1 | r_1 | R is free software and comes with ABSOLUTELY NO WARRANTY. r_1 | You are welcome to redistribute it under certain conditions. r_1 | Type 'license()' or 'licence()' for distribution details. r_1 | r_1 | R is a collaborative project with many contributors. r_1 | Type 'contributors()' for more information and r_1 | 'citation()' on how to cite R or R packages in publications. r_1 | db_1 | Initializing database r_1 | Type 'demo()' for some demos, 'help()' for on-line help, or r_1 | 'help.start()' for an HTML browser interface to help. r_1 | Type 'q()' to quit R. r_1 | r_1 | > Rserve::run.Rserve(remote=TRUE, auth=FALSE, daemon=FALSE) r_1 | -- running Rserve in this R session (pid=1), 1 server(s) -- r_1 | (This session will block until Rserve is shut down) app_1 | Setting libpaper1 papersize to letter app_1 | Cloning the OPL - This takes time - please be patient. app_1 | Cloning into 'webwork-open-problem-library'... db_1 | db_1 | db_1 | PLEASE REMEMBER TO SET A PASSWORD FOR THE MariaDB root USER ! db_1 | To do so, start the server, then issue the following commands: db_1 | db_1 | '/usr/bin/mysqladmin' -u root password 'new-password' db_1 | '/usr/bin/mysqladmin' -u root -h password 'new-password' db_1 | db_1 | Alternatively you can run: db_1 | '/usr/bin/mysql_secure_installation' db_1 | db_1 | which will also give you the option of removing the test db_1 | databases and anonymous user created by default. This is db_1 | strongly recommended for production servers. db_1 | db_1 | See the MariaDB Knowledgebase at http://mariadb.com/kb or the db_1 | MySQL manual for more instructions. db_1 | db_1 | Please report any problems at http://mariadb.org/jira db_1 | db_1 | The latest information about MariaDB is available at http://mariadb.org/. db_1 | You can find additional information about the MySQL part at: db_1 | http://dev.mysql.com db_1 | Consider joining MariaDB's strong and vibrant community: db_1 | https://mariadb.org/get-involved/ db_1 | db_1 | Database initialized app_1 | POST git-upload-pack (177 bytes) db_1 | MySQL init process in progress... db_1 | 2019-10-06 18:44:41 0 [Note] mysqld (mysqld 10.4.8-MariaDB-1:10.4.8+maria~bionic) starting as process 107 ... db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Using Linux native AIO db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Uses event mutexes db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Compressed tables use zlib 1.2.11 db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Number of pools: 1 db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Using SSE2 crc32 instructions db_1 | 2019-10-06 18:44:41 0 [Note] mysqld: O_TMPFILE is not supported on /tmp (disabling future attempts) db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Initializing buffer pool, total size = 256M, instances = 1, chunk size = 128M db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Completed initialization of buffer pool db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority(). db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: 128 out of 128 rollback segments are active. db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Creating shared tablespace for temporary tables db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ... db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB. db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Waiting for purge to start app_1 | remote: Enumerating objects: 56, done. remote: Counting objects: 100% (56/56), done. remote: Compressing objects: 100% (51/51), done. db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: 10.4.8 started; log sequence number 139827; transaction id 21 db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool db_1 | 2019-10-06 18:44:41 0 [Note] Plugin 'FEEDBACK' is disabled. db_1 | 2019-10-06 18:44:41 0 [Warning] 'user' entry 'root@28c7133c48c2' ignored in --skip-name-resolve mode. db_1 | 2019-10-06 18:44:41 0 [Warning] 'user' entry '@28c7133c48c2' ignored in --skip-name-resolve mode. db_1 | 2019-10-06 18:44:41 0 [Warning] 'proxies_priv' entry '@% root@28c7133c48c2' ignored in --skip-name-resolve mode. db_1 | 2019-10-06 18:44:41 0 [Note] InnoDB: Buffer pool(s) load completed at 191006 18:44:41 db_1 | 2019-10-06 18:44:41 0 [Note] Reading of all Master_info entries succeeded db_1 | 2019-10-06 18:44:41 0 [Note] Added new Master_info '' to hash table db_1 | 2019-10-06 18:44:41 0 [Note] mysqld: ready for connections. db_1 | Version: '10.4.8-MariaDB-1:10.4.8+maria~bionic' socket: '/var/run/mysqld/mysqld.sock' port: 0 mariadb.org binary distribution db_1 | Warning: Unable to load '/usr/share/zoneinfo/leap-seconds.list' as time zone. Skipping it. db_1 | 2019-10-06 18:45:12 10 [Warning] 'proxies_priv' entry '@% root@28c7133c48c2' ignored in --skip-name-resolve mode. db_1 | db_1 | 2019-10-06 18:45:12 0 [Note] mysqld (initiated by: unknown): Normal shutdown db_1 | 2019-10-06 18:45:12 0 [Note] Event Scheduler: Purging the queue. 0 events db_1 | 2019-10-06 18:45:12 0 [Note] InnoDB: FTS optimize thread exiting. db_1 | 2019-10-06 18:45:13 0 [Note] InnoDB: Starting shutdown... db_1 | 2019-10-06 18:45:13 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool db_1 | 2019-10-06 18:45:13 0 [Note] InnoDB: Buffer pool(s) dump completed at 191006 18:45:13 db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Shutdown completed; log sequence number 20283309; transaction id 14632 db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1" db_1 | 2019-10-06 18:45:14 0 [Note] mysqld: Shutdown complete db_1 | db_1 | db_1 | MySQL init process done. Ready for start up. db_1 | db_1 | 2019-10-06 18:45:14 0 [Note] mysqld (mysqld 10.4.8-MariaDB-1:10.4.8+maria~bionic) starting as process 1 ... db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Using Linux native AIO db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Uses event mutexes db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Compressed tables use zlib 1.2.11 db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Number of pools: 1 db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Using SSE2 crc32 instructions db_1 | 2019-10-06 18:45:14 0 [Note] mysqld: O_TMPFILE is not supported on /tmp (disabling future attempts) db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Initializing buffer pool, total size = 256M, instances = 1, chunk size = 128M db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Completed initialization of buffer pool db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority(). db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: 128 out of 128 rollback segments are active. db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Creating shared tablespace for temporary tables db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ... db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB. db_1 | 2019-10-06 18:45:14 0 [Note] InnoDB: Waiting for purge to start db_1 | 2019-10-06 18:45:15 0 [Note] InnoDB: 10.4.8 started; log sequence number 20283309; transaction id 14632 db_1 | 2019-10-06 18:45:15 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool db_1 | 2019-10-06 18:45:15 0 [Note] Plugin 'FEEDBACK' is disabled. db_1 | 2019-10-06 18:45:15 0 [Note] Server socket created on IP: '::'. db_1 | 2019-10-06 18:45:15 0 [Warning] 'proxies_priv' entry '@% root@28c7133c48c2' ignored in --skip-name-resolve mode. db_1 | 2019-10-06 18:45:15 0 [Note] InnoDB: Buffer pool(s) load completed at 191006 18:45:15 db_1 | 2019-10-06 18:45:15 0 [Note] Reading of all Master_info entries succeeded db_1 | 2019-10-06 18:45:15 0 [Note] Added new Master_info '' to hash table db_1 | 2019-10-06 18:45:15 0 [Note] mysqld: ready for connections. db_1 | Version: '10.4.8-MariaDB-1:10.4.8+maria~bionic' socket: '/var/run/mysqld/mysqld.sock' port: 3306 mariadb.org binary distribution remote: Total 383391 (delta 22), reused 14 (delta 4), pack-reused 383335 Receiving objects: 100% (383391/383391), 512.57 MiB | 7.27 MiB/s, done./s Resolving deltas: 100% (295904/295904), done. Checking out files: 100% (67466/67466), done.6) app_1 | Creating a new /opt/webwork/webwork2/conf/site.conf app_1 | Creating a new /opt/webwork/webwork2/conf/localOverrides.conf app_1 | Waiting for database to become available... db_1 | 2019-10-06 18:46:08 8 [Warning] Aborted connection 8 to db: 'unconnected' user: 'unauthenticated' host: '172.23.0.4' (This connection closed normally without authentication) app_1 | Can't create html_temp directory '/opt/webwork/webwork2/htdocs/tmp/admin', since the parent directory is not writeable. You will have to create this directory manually. app_1 | addcourse: WeBWorK root directory set to /opt/webwork/webwork2 app_1 | addcourse: WeBWorK server is starting app_1 | addcourse: WeBWorK root directory set to /opt/webwork/webwork2 in webwork2/conf/webwork.apache2-config app_1 | addcourse: The following locations and urls are set in webwork2/conf/site.conf app_1 | addcourse: PG root directory set to /opt/webwork/pg app_1 | addcourse: WeBWorK server userID is www-data app_1 | addcourse: WeBWorK server groupID is www-data app_1 | addcourse: The webwork url on this site is http://localhost/webwork2 app_1 | Admin course is created. app_1 | create modelCourse subdirectory app_1 | Creating htdocs/tmp directory app_1 | htdocs/tmp directory created app_1 | defaultClasslist.lst is being created app_1 | We will run OPL-update as the tagging-taxonomy.json file is missing in webwork2/htdocs/DATA/. app_1 | Check if you should be mounting webwork2/htdocs/DATA/ from outside the Docker image! app_1 | Download a JSON containing information on the latest release app_1 | curl -s https://api.github.com/repos/heiderich/webwork-open-problem-library/releases/latest > latest_release.json app_1 | curl -L `jq -r '[.assets | .[] | select(.name == "webwork-open-problem-library-METADATA.tar.gz" ) | .browser_download_url][0]' latest_release.json` -o webwork-open-problem-library-METADATA.tar.gz app_1 | % Total % Received % Xferd Average Speed Time Time Time Current app_1 | Dload Upload Total Spent Left Speed 100 634 0 634 0 0 2193 0 --:--:-- --:--:-- --:--:-- 2193 100 1023k 100 1023k 0 0 1199k 0 --:--:-- --:--:-- --:--:-- 1199k app_1 | tar xfz webwork-open-problem-library-METADATA.tar.gz app_1 | jq -r '.tag_name' latest_release.json > latest_release.tag app_1 | fatal: No such remote: heiderich app_1 | From https://github.com/heiderich/webwork-open-problem-library app_1 | * [new branch] master -> heiderich/master app_1 | * [new tag] 2019-08-19-0787211298 -> 2019-08-19-0787211298 app_1 | * [new tag] 2019-09-19-206e5c400f -> 2019-09-19-206e5c400f app_1 | * [new tag] 2019-09-25-3377b28ab0 -> 2019-09-25-3377b28ab0 app_1 | * [new tag] aaa -> aaa app_1 | * [new tag] test -> test app_1 | * [new tag] zzz -> zzz app_1 | Checking out tag 2019-09-25-3377b28ab0 app_1 | Note: checking out '2019-09-25-3377b28ab0'. app_1 | app_1 | You are in 'detached HEAD' state. You can look around, make experimental app_1 | changes and commit them, and you can discard any commits you make in this app_1 | state without impacting any branches by performing another checkout. app_1 | app_1 | If you want to create a new branch to retain commits you create, you may app_1 | do so (now or later) by using -b with the checkout command again. Example: app_1 | app_1 | git checkout -b <new-branch-name> app_1 | app_1 | HEAD is now at 3377b28ab0 Merge pull request #602 from jirilebl/fixes2 app_1 | Restoring OPL tables from the TABLE-DUMP/OPL-tables.sql file app_1 | Waiting for database to become available... db_1 | 2019-10-06 18:46:13 10 [Warning] Aborted connection 10 to db: 'unconnected' user: 'unauthenticated' host: '172.23.0.4' (This connection closed normally without authentication) app_1 | OPL path seems to be /opt/webwork/libraries/webwork-open-problem-library/ app_1 | Importing statistics for 2 courses. app_1 | 1 2 app_1 | app_1 | You may want to run load-OPL-global-statistics.pl to update the global statistics data. app_1 | If this is being run by OPL-update, that will be done automatically. app_1 | Restoring JSON files from JSON-SAVED directory app_1 | Fixing ownership and permissions (just in case it is needed) app_1 | end fixing ownership and permissions app_1 | webwork.apache2-config: WeBWorK server is starting app_1 | webwork.apache2-config: WeBWorK root directory set to /opt/webwork/webwork2 in webwork2/conf/webwork.apache2-config app_1 | webwork.apache2-config: The following locations and urls are set in webwork2/conf/site.conf app_1 | webwork.apache2-config: PG root directory set to /opt/webwork/pg app_1 | webwork.apache2-config: WeBWorK server userID is www-data app_1 | webwork.apache2-config: WeBWorK server groupID is www-data app_1 | webwork.apache2-config: The webwork url on this site is http://localhost/webwork2 app_1 | webwork.apache2-config: The webwork smtp server address is localhost app_1 | webwork.apache2-config: The webwork smtp server port is app_1 | webwork.apache2-config: The webwork smtp server protocol is 'not ssl' app_1 | Check in with MAA site app_1 | End connectivity check app_1 | WebworkSOAP::WSDL: webwork_directory set to /opt/webwork/webwork2 via $WeBWorK::Constants::WEBWORK_DIRECTORY set in webwork.apache2-config app_1 | WebworkSOAP::WSDL: rpc_url set to http://localhost/webwork2_rpc app_1 | WebworkWebservice: webwork_directory set to /opt/webwork/webwork2 via $WeBWorK::Constants::WEBWORK_DIRECTORY set in webwork.apache2-config app_1 | webwork.apache2-config: WeBWorK server is starting app_1 | webwork.apache2-config: WeBWorK root directory set to /opt/webwork/webwork2 in webwork2/conf/webwork.apache2-config app_1 | webwork.apache2-config: The following locations and urls are set in webwork2/conf/site.conf app_1 | webwork.apache2-config: PG root directory set to /opt/webwork/pg app_1 | webwork.apache2-config: WeBWorK server userID is www-data app_1 | webwork.apache2-config: WeBWorK server groupID is www-data app_1 | webwork.apache2-config: The webwork url on this site is http://localhost/webwork2 app_1 | webwork.apache2-config: The webwork smtp server address is localhost app_1 | webwork.apache2-config: The webwork smtp server port is app_1 | webwork.apache2-config: The webwork smtp server protocol is 'not ssl' app_1 | Check in with MAA site
