Hello,
My Docker installation got stuck running "docker-compose up". Here is the output from the terminal:
Successfully built da67f779695b
Successfully tagged webwork:latest
WARNING: Image for service app was built because it did not already exist. To rebuild this image you must use `docker-compose build` or `docker-compose up --build`.
Creating webwork2_db_1 ... done
Creating webwork2_r_1 ... done
Creating webwork2_app_1 ... done
Attaching to webwork2_r_1, webwork2_db_1, webwork2_app_1
db_1 | 2020-08-06 02:20:17+00:00 [Note] [Entrypoint]: Entrypoint script for MySQL Server 1:10.4.13+maria~focal started.
r_1 |
r_1 | R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
r_1 | Copyright (C) 2020 The R Foundation for Statistical Computing
r_1 | Platform: x86_64-pc-linux-gnu (64-bit)
r_1 |
r_1 | R is free software and comes with ABSOLUTELY NO WARRANTY.
r_1 | You are welcome to redistribute it under certain conditions.
r_1 | Type 'license()' or 'licence()' for distribution details.
r_1 |
r_1 | R is a collaborative project with many contributors.
r_1 | Type 'contributors()' for more information and
r_1 | 'citation()' on how to cite R or R packages in publications.
r_1 |
r_1 | Type 'demo()' for some demos, 'help()' for on-line help, or
r_1 | 'help.start()' for an HTML browser interface to help.
r_1 | Type 'q()' to quit R.
r_1 |
r_1 | > Rserve::run.Rserve(remote=TRUE, auth=FALSE, daemon=FALSE)
r_1 | -- running Rserve in this R session (pid=1), 1 server(s) --
r_1 | (This session will block until Rserve is shut down)
app_1 | Setting libpaper1 papersize to letter
db_1 | 2020-08-06 02:20:18+00:00 [Note] [Entrypoint]: Switching to dedicated user 'mysql'
db_1 | 2020-08-06 02:20:18+00:00 [Note] [Entrypoint]: Entrypoint script for MySQL Server 1:10.4.13+maria~focal started.
app_1 | Cloning the OPL - This takes time - please be patient.
app_1 | Cloning into 'webwork-open-problem-library'...
db_1 | 2020-08-06 02:20:18+00:00 [Note] [Entrypoint]: Initializing database files
app_1 | POST git-upload-pack (177 bytes)
app_1 | remote: Enumerating objects: 261, done.
remote: Counting objects: 100% (261/261), done.
remote: Compressing objects: 100% (199/199), done.
db_1 |
db_1 |
db_1 | PLEASE REMEMBER TO SET A PASSWORD FOR THE MariaDB root USER !
db_1 | To do so, start the server, then issue the following commands:
db_1 |
db_1 | '/usr/bin/mysqladmin' -u root password 'new-password'
db_1 | '/usr/bin/mysqladmin' -u root -h password 'new-password'
db_1 |
db_1 | Alternatively you can run:
db_1 | '/usr/bin/mysql_secure_installation'
db_1 |
db_1 | which will also give you the option of removing the test
db_1 | databases and anonymous user created by default. This is
db_1 | strongly recommended for production servers.
db_1 |
db_1 | See the MariaDB Knowledgebase at http://mariadb.com/kb or the
db_1 | MySQL manual for more instructions.
db_1 |
db_1 | Please report any problems at http://mariadb.org/jira
db_1 |
db_1 | The latest information about MariaDB is available at http://mariadb.org/.
db_1 | You can find additional information about the MySQL part at:
db_1 | http://dev.mysql.com
db_1 | Consider joining MariaDB's strong and vibrant community:
db_1 | https://mariadb.org/get-involved/
db_1 |
db_1 | 2020-08-06 02:20:21+00:00 [Note] [Entrypoint]: Database files initialized
db_1 | 2020-08-06 02:20:21+00:00 [Note] [Entrypoint]: Starting temporary server
db_1 | 2020-08-06 02:20:21+00:00 [Note] [Entrypoint]: Waiting for server startup
db_1 | 2020-08-06 2:20:21 0 [Note] mysqld (mysqld 10.4.13-MariaDB-1:10.4.13+maria~focal) starting as process 120 ...
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Using Linux native AIO
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Uses event mutexes
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Number of pools: 1
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Using SSE2 crc32 instructions
db_1 | 2020-08-06 2:20:21 0 [Note] mysqld: O_TMPFILE is not supported on /tmp (disabling future attempts)
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Initializing buffer pool, total size = 256M, instances = 1, chunk size = 128M
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Completed initialization of buffer pool
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: 128 out of 128 rollback segments are active.
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Creating shared tablespace for temporary tables
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: 10.4.13 started; log sequence number 60972; transaction id 21
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
db_1 | 2020-08-06 2:20:21 0 [Note] Plugin 'FEEDBACK' is disabled.
db_1 | 2020-08-06 2:20:21 0 [Warning] 'user' entry 'root@9b1b45850ea4' ignored in --skip-name-resolve mode.
db_1 | 2020-08-06 2:20:21 0 [Warning] 'user' entry '@9b1b45850ea4' ignored in --skip-name-resolve mode.
db_1 | 2020-08-06 2:20:21 0 [Warning] 'proxies_priv' entry '@% root@9b1b45850ea4' ignored in --skip-name-resolve mode.
db_1 | 2020-08-06 2:20:21 0 [Note] InnoDB: Buffer pool(s) load completed at 200806 2:20:21
db_1 | 2020-08-06 2:20:21 0 [Note] Reading of all Master_info entries succeeded
db_1 | 2020-08-06 2:20:21 0 [Note] Added new Master_info '' to hash table
db_1 | 2020-08-06 2:20:21 0 [Note] mysqld: ready for connections.
db_1 | Version: '10.4.13-MariaDB-1:10.4.13+maria~focal' socket: '/var/run/mysqld/mysqld.sock' port: 0 mariadb.org binary distribution
db_1 | 2020-08-06 02:20:22+00:00 [Note] [Entrypoint]: Temporary server started.
db_1 | Warning: Unable to load '/usr/share/zoneinfo/leap-seconds.list' as time zone. Skipping it.
db_1 | Warning: Unable to load '/usr/share/zoneinfo/leapseconds' as time zone. Skipping it.
db_1 | Warning: Unable to load '/usr/share/zoneinfo/tzdata.zi' as time zone. Skipping it.
db_1 | 2020-08-06 2:20:28 10 [Warning] 'proxies_priv' entry '@% root@9b1b45850ea4' ignored in --skip-name-resolve mode.
db_1 | 2020-08-06 02:20:28+00:00 [Note] [Entrypoint]: Creating database webwork
db_1 | 2020-08-06 02:20:28+00:00 [Note] [Entrypoint]: Creating user webworkWrite
db_1 | 2020-08-06 02:20:28+00:00 [Note] [Entrypoint]: Giving user webworkWrite access to schema webwork
db_1 | 2020-08-06 2:20:28 14 [Warning] 'proxies_priv' entry '@% root@9b1b45850ea4' ignored in --skip-name-resolve mode.
db_1 |
db_1 | 2020-08-06 02:20:28+00:00 [Note] [Entrypoint]: Stopping temporary server
db_1 | 2020-08-06 2:20:28 0 [Note] mysqld (initiated by: root[root] @ localhost []): Normal shutdown
db_1 | 2020-08-06 2:20:28 0 [Note] Event Scheduler: Purging the queue. 0 events
db_1 | 2020-08-06 2:20:28 0 [Note] InnoDB: FTS optimize thread exiting.
db_1 | 2020-08-06 2:20:28 0 [Note] InnoDB: Starting shutdown...
db_1 | 2020-08-06 2:20:28 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
db_1 | 2020-08-06 2:20:28 0 [Note] InnoDB: Buffer pool(s) dump completed at 200806 2:20:28
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Shutdown completed; log sequence number 60981; transaction id 24
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
db_1 | 2020-08-06 2:20:30 0 [Note] mysqld: Shutdown complete
db_1 |
db_1 | 2020-08-06 02:20:30+00:00 [Note] [Entrypoint]: Temporary server stopped
db_1 |
db_1 | 2020-08-06 02:20:30+00:00 [Note] [Entrypoint]: MySQL init process done. Ready for start up.
db_1 |
db_1 | 2020-08-06 2:20:30 0 [Note] mysqld (mysqld 10.4.13-MariaDB-1:10.4.13+maria~focal) starting as process 1 ...
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Using Linux native AIO
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Uses event mutexes
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Compressed tables use zlib 1.2.11
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Number of pools: 1
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Using SSE2 crc32 instructions
db_1 | 2020-08-06 2:20:30 0 [Note] mysqld: O_TMPFILE is not supported on /tmp (disabling future attempts)
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Initializing buffer pool, total size = 256M, instances = 1, chunk size = 128M
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Completed initialization of buffer pool
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: 128 out of 128 rollback segments are active.
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Creating shared tablespace for temporary tables
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Waiting for purge to start
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: 10.4.13 started; log sequence number 60981; transaction id 21
db_1 | 2020-08-06 2:20:30 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
db_1 | 2020-08-06 2:20:30 0 [Note] Plugin 'FEEDBACK' is disabled.
db_1 | 2020-08-06 2:20:31 0 [Note] Server socket created on IP: '::'.
db_1 | 2020-08-06 2:20:31 0 [Note] InnoDB: Buffer pool(s) load completed at 200806 2:20:31
db_1 | 2020-08-06 2:20:31 0 [Warning] 'proxies_priv' entry '@% root@9b1b45850ea4' ignored in --skip-name-resolve mode.
db_1 | 2020-08-06 2:20:31 0 [Note] Reading of all Master_info entries succeeded
db_1 | 2020-08-06 2:20:31 0 [Note] Added new Master_info '' to hash table
db_1 | 2020-08-06 2:20:31 0 [Note] mysqld: ready for connections.
db_1 | Version: '10.4.13-MariaDB-1:10.4.13+maria~focal' socket: '/var/run/mysqld/mysqld.sock' port: 3306 mariadb.org binary distribution
Has anyone encountered this before? Thank you.